Article: Leduc et al, 2024

• Preprint: Leduc A, Xu Y, Shipkovenska G, Dou Z, Slavov N, Limiting the impact of protein leakage in single-cell proteomics, bioRxiv, doi: 10.1101/2024.07.26.605378
• Code available at: github.com/SlavovLab/CellPermeability

Methods used:

• Single-cell proteomics: pSCoPE
• Sample preparation: nPOP
• Data analysis package: QuantQC

Model systems: Primary murine tracheal cells

RAW Data Code Processed Data

Raw Data

• MassIVE Repository:
  • http: MassIVE MSV000094790
  • ftp:   MassIVE MSV000094790

   

   

Processed Data

• Processed Data
  • This folder contains all processed data outputs from analysis. All files required to replicate analysis are in the github repository
    • Protein matricies imputed and unimputed
    • Meta data linking permeability status and cell type assignment