Article: Leduc et al, 2023

• Peer-reviewed article: Leduc A, Luke Khoury, Joshua Cantlon, Slavov N. (2024) Massively parallel sample preparation for multiplexed single-cell proteomics using nPOP, Nature Protocols, doi: 10.1038/s41596-024-01033-8

Methods used:

• Single-cell proteomics: plexDIA, and pSCoPE
• Sample preparation: nPOP
• Data analysis package: QuantQC

Model systems: Cell lines, U-937 monocyte, WM-989 Melanoma, CPAFII PDAC

RAW Data Code Processed Data

Raw Data

• MassIVE Repository:
  • http: MSV000093494 -Spectral library for searching single cells
  • ftp:   MSV000093494

   

   

Processed Data from experiments benchmarking nPOP

• Processed Data
  • Processed single cell protein data (no imputation)
  • Meta data
  • Processed bulk data (no imputation)