Article: Leduc et al, 2022

Single-cell proteomics method: pSCoPE

Sample preparation method: nPOP

Model systems: Cell lines of monocytes (U937 cells) and melanoma cells.

Supplementary tables RAW Data Code Protocol Processed Data Videos

Supplementary tables

• Supp Table 1: Bulk_CDC_PSEA
  • Protein set enrichment analysis based on protein levels in cells isolated based on DNA content from Fig. 3
• Supp Table 2: CDC_protein_correlations
  • Additional proteins that correlate significantly to the CDC protein markers
• Supp Table 3: CDC_SC_PSEA
  • Protein set enrichment in the space of correlations between proteins and the CDC protein markers
• Supp Table 4: Diff_prot_subPOP
  • Differentially abundant proteins between melanoma sub-populations
• Supp Table 5: Melanoma_SubPop_PSEA
  • Protein set enrichment analysis between melanoma sub-populations

   

   

Raw Data from experiments benchmarking nPOP

• MassIVE Repository:
  • Description of Repository
  • http: MSV000089159
  • ftp:   MSV000089159

   

   

Processed Data from experiments benchmarking nPOP

• Data Files Description
  • This spreadsheet contains the description for all processed data files and analysis outputs
• Processed Data
  • This folder contains all processed data necessary for performing the analysis, as well as outputs from analysis
• Supplementary Tables with data: Tables 1 - 5
  • Supplementary tables from Leduc et al.
• DO-MS Report
  • A DO-MS report for a representative set of 8 mass-spectrometry runs

   

   

Recorded video presentations